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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
total RNA-seq
ChIP-seq
21
ATAC-seq
4
DNase-seq
4
WGBS
3
small RNA-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
174
Transcription
25
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Date released
143
May, 2020
40
May, 2022
8
July, 2019
6
August, 2017
3
March, 2020
3
November, 2018
1
February, 2020
1
February, 2021
1
October, 2019
Available data
176
bigWig
156
bam
154
tsv
24
bed narrowPeak
6
fastq
4
bigBed narrowPeak
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
206
Homo sapiens
Biosample type
206
tissue
23
cell line
10
primary cell
Organ
473
connective tissue
415
adipose tissue
388
pancreas
272
kidney
206
liver
190
heart
158
bone element
60
blood vessel
60
vasculature
56
brain
56
limb
54
eye
53
musculature of body
45
artery
20
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
206
AMP
Genome assembly (visualization)
178
hg19
156
GRCh38
Lab
166
AMP-T2D consortium
40
Karen Mohlke, UNC
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
206 results
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total RNA-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
20
2
3
1
1
1
1
1
right lobe of liver
3
1
2
1
2
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