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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
177
total RNA-seq
59
ATAC-seq
9
DNase-seq
7
single cell RNA-seq
6
WGBS
3
small RNA-seq
2
Hi-C
2
pCHi-C
1
RRBS
Assay category
187
Transcription
68
DNA accessibility
7
DNA methylation
2
3D chromatin structure
Date released
143
May, 2020
40
May, 2022
35
February, 2023
15
July, 2019
6
August, 2017
6
August, 2021
6
March, 2020
4
February, 2020
4
October, 2019
3
June, 2019
3
November, 2018
1
February, 2021
Available data
189
bigWig
170
bam
168
tsv
67
bed narrowPeak
9
bigBed narrowPeak
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
6
fastq
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
csv
Organism
266
Homo sapiens
Biosample type
266
tissue
83
cell line
23
primary cell
Organ
473
connective tissue
415
adipose tissue
388
pancreas
272
kidney
206
liver
190
heart
158
bone element
60
blood vessel
60
vasculature
56
brain
56
limb
54
eye
53
musculature of body
45
artery
20
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
266
AMP
Genome assembly (visualization)
204
GRCh38
191
hg19
Lab
226
AMP-T2D consortium
40
Karen Mohlke, UNC
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
266 results
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total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
small RNA-seq
Hi-C
pCHi-C
RRBS
tissue
liver
167
20
2
1
3
1
1
1
1
coronary artery
1
36
2
aorta
1
4
2
1
1
right lobe of liver
3
1
2
1
2
tibial artery
1
1
2
ascending aorta
2
1
thoracic aorta
2
1
pulmonary artery
2
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