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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
289
total RNA-seq
117
ChIP-seq
62
ATAC-seq
snATAC-seq
7
DNase-seq
4
Hi-C
4
MeRIP-seq
4
WGBS
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
291
Transcription
117
DNA binding
71
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
73
histone
73
histone modification
41
broad histone mark
32
narrow histone mark
29
control
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
147
August, 2017
120
July, 2018
51
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
16
February, 2023
9
March, 2020
7
November, 2018
6
April, 2018
6
July, 2019
6
September, 2017
5
March, 2019
5
October, 2017
4
June, 2019
4
November, 2020
3
October, 2019
2
August, 2021
2
May, 2019
1
February, 2020
Available data
429
bam
373
bigWig
275
tsv
213
fastq
123
bed narrowPeak
62
bigBed narrowPeak
27
bed bed3+
20
bed broadPeak
16
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
487
Homo sapiens
Biosample type
494
tissue
346
primary cell
92
cell line
3
in vitro differentiated cells
Organ
547
connective tissue
494
pancreas
488
adipose tissue
361
liver
293
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
81
musculature of body
73
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
10
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
474
AMP
20
T1D
Genome assembly (visualization)
413
hg19
386
GRCh38
Lab
441
AMP-T2D consortium
41
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
494 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
MeRIP-seq
WGBS
FAIRE-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
284
50
58
1
3
4
1
1
body of pancreas
3
35
4
4
2
2
pancreas
2
16
2
1
2
1
1
1
endocrine pancreas
16
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