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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
19
ATAC-seq
6
total RNA-seq
3
RRBS
2
FAIRE-seq
2
WGBS
Assay category
65
DNA binding
21
DNA accessibility
6
Transcription
5
DNA methylation
Target of assay
64
control
1
broad histone mark
1
histone
1
histone modification
Date released
27
October, 2018
24
May, 2022
17
August, 2017
12
December, 2017
4
December, 2018
4
November, 2018
4
September, 2017
3
October, 2017
1
January, 2019
1
March, 2019
Available data
204
bam
159
tsv
157
txt
122
tagAlign
101
bed narrowPeak
97
fastq
60
bigWig
22
bed broadPeak
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
bigBed narrowPeak
6
csv
5
bed bed3
1
bed bed3+
1
bedpe
Organism
96
Homo sapiens
Biosample type
180
primary cell
106
cell line
97
tissue
23
in vitro differentiated cells
1
stem cell
Organ
43
pancreas
21
liver
20
adipose tissue
20
connective tissue
8
spleen
3
brain
2
musculature of body
Project
97
AMP
Genome assembly (visualization)
294
hg19
GRCh38
Lab
72
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
missing controlled_by
assembly!
GRCh38
BIOSAMPLE
ASSAY
97 results
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ChIP-seq
ATAC-seq
total RNA-seq
RRBS
FAIRE-seq
WGBS
tissue
islet of Langerhans
5
19
6
1
liver
16
1
1
subcutaneous adipose tissue
10
body of pancreas
8
omental fat pad
8
spleen
8
pancreas
3
1
brain
3
right lobe of liver
3
adipose tissue
1
1
skeletal muscle tissue
2
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