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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
Hi-C
3
pCHi-C
Assay category
14
3D chromatin structure
Date released
11
March, 2020
3
October, 2019
1
August, 2018
1
August, 2021
1
November, 2019
Available data
2198
bam
1991
bigWig
1207
tsv
1076
bed narrowPeak
578
bigBed narrowPeak
518
fastq
278
tagAlign
230
bed bed3+
214
bed broadPeak
177
bigBed broadPeak
160
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
17
Homo sapiens
Biosample type
10
tissue
7
in vitro differentiated cells
4
primary cell
2
cell line
Organ
3
heart
3
pancreas
2
musculature of body
1
adipose tissue
1
blood vessel
1
connective tissue
1
liver
1
vasculature
Project
17
AMP
Genome assembly (visualization)
15
hg19
Lab
16
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
BIOSAMPLE
ASSAY
17 results
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Clear Filters
Hi-C
pCHi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
heart right ventricle
1
liver
1
pancreas
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
See all biosamples
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