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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
total RNA-seq
107
ChIP-seq
21
ATAC-seq
4
DNase-seq
4
WGBS
3
small RNA-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
174
Transcription
107
DNA binding
25
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
65
histone modification
64
histone
42
narrow histone mark
34
control
22
broad histone mark
8
transcription factor
Date released
193
May, 2020
December, 2017
54
August, 2017
40
May, 2022
8
July, 2019
7
November, 2018
6
October, 2019
3
March, 2020
1
February, 2020
1
February, 2021
Available data
240
bam
229
bigWig
154
tsv
77
bed narrowPeak
70
tagAlign
35
fastq
13
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
313
Homo sapiens
Biosample type
401
cell line
313
tissue
14
primary cell
0
in vitro differentiated cells
Organ
644
connective tissue
508
pancreas
489
adipose tissue
314
heart
313
liver
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
epithelium
20
lung
18
ureter
16
embryo
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
313
AMP
Genome assembly (visualization)
232
hg19
202
GRCh38
Lab
273
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
1
inconsistent control read length
month_released!
December, 2017
BIOSAMPLE
ASSAY
313 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
107
20
2
3
1
1
1
1
1
right lobe of liver
3
1
2
1
2
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