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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
12
ATAC-seq
4
total RNA-seq
1
RNA microarray
Assay category
22
DNA binding
12
DNA accessibility
4
Transcription
Target of assay
15
histone
15
histone modification
8
narrow histone mark
7
broad histone mark
4
control
3
transcription factor
2
RNA binding protein
1
chromatin remodeller
Date released
19
December, 2017
14
February, 2023
5
May, 2021
1
December, 2019
Available data
30
bed narrowPeak
24
bam
20
bigWig
19
fastq
14
bigBed narrowPeak
5
tsv
3
tagAlign
Organism
39
Homo sapiens
Biosample type
406
primary cell
79
cell line
24
in vitro differentiated cells
15
tissue
Organ
644
connective tissue
508
pancreas
489
adipose tissue
376
liver
314
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
39
epithelium
29
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
39
AMP
Genome assembly (visualization)
32
hg19
20
GRCh38
Lab
39
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
ATAC-seq
total RNA-seq
RNA microarray
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
pancreatic PP cell
3
endothelial cell
1
intermediate endothelial cell
1
tissue
pigmented layer of retina
12
2
renal glomerulus
1
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