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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
211
ChIP-seq
103
total RNA-seq
27
ATAC-seq
10
WGBS
3
RRBS
2
FAIRE-seq
1
DNase-seq
Assay category
211
DNA binding
103
Transcription
30
DNA accessibility
13
DNA methylation
Target of assay
79
transcription factor
67
control
65
histone modification
64
histone
39
broad histone mark
25
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
169
August, 2017
58
October, 2018
48
December, 2017
24
May, 2022
17
November, 2018
13
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
July, 2018
Available data
1907
bam
1732
bigWig
1076
tsv
944
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
356
Homo sapiens
Biosample type
389
primary cell
369
cell line
357
tissue
140
in vitro differentiated cells
4
stem cell
Organ
203
pancreas
80
liver
42
adipose tissue
42
connective tissue
23
spleen
7
brain
2
musculature of body
Project
357
AMP
Genome assembly (visualization)
275
hg19
261
GRCh38
Lab
333
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
Audit category:
24
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
357 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
RRBS
FAIRE-seq
DNase-seq
tissue
islet of Langerhans
28
103
18
1
1
liver
67
1
1
body of pancreas
33
4
2
spleen
20
1
2
pancreas
10
2
1
subcutaneous adipose tissue
12
1
omental fat pad
11
1
white adipose tissue
12
right lobe of liver
10
1
brain
6
adipose tissue
2
3
skeletal muscle tissue
2
cerebellum (Hemisphere)
1
See all biosamples
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