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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
50
total RNA-seq
27
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
115
Transcription
82
DNA accessibility
27
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
128
August, 2021
47
September, 2023
23
April, 2019
14
May, 2023
8
February, 2021
4
July, 2019
4
October, 2019
3
December, 2019
Available data
153
bed narrowPeak
98
bam
91
bigWig
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
bigBed broadPeak
64
xls
62
txt
12
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
231
Homo sapiens
Biosample type
231
tissue
26
primary cell
19
cell line
Organ
545
connective tissue
499
pancreas
486
adipose tissue
358
liver
246
heart
238
brain
231
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
50
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
184
AMP
47
KPMP
Genome assembly (visualization)
97
GRCh38
25
hg19
Lab
142
Katalin Susztak, Upenn
47
KPMP
42
AMP-T2D consortium
Audit category:
7
audit script error
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
231 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
RRBS
small RNA-seq
tissue
kidney
75
64
49
27
6
1
1
1
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
renal glomerulus
1
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