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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
10
Hi-C
1
snATAC-seq
Assay category
72
Transcription
10
3D chromatin structure
1
DNA accessibility
Date released
89
February, 2021
58
August, 2021
7
March, 2020
7
May, 2022
4
February, 2023
1
November, 2019
1
October, 2019
Available data
1907
bam
1732
bigWig
1076
tsv
944
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
167
Homo sapiens
Biosample type
167
tissue
10
in vitro differentiated cells
4
primary cell
3
cell line
Organ
88
bone element
62
kidney
9
pancreas
4
skeleton
3
heart
3
musculature of body
1
blood vessel
1
liver
1
vasculature
Project
167
AMP
Genome assembly (visualization)
10
hg19
Lab
103
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
84
inconsistent ontology term
6
audit script error
BIOSAMPLE
ASSAY
167 results
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RNA microarray
total RNA-seq
single cell RNA-seq
Hi-C
snATAC-seq
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
2
psoas muscle
2
acetabular part of hip bone
1
aorta
1
heart
1
heart left ventricle
1
heart right ventricle
1
ilium
1
ischium
1
liver
1
pancreas
1
pubis
1
skeletal muscle tissue
1
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