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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
DNase-seq
1
Hi-C
Assay category
176
DNA accessibility
1
3D chromatin structure
Date released
163
June, 2019
9
November, 2018
4
October, 2019
1
March, 2019
Available data
1907
bam
1732
bigWig
1076
tsv
944
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
177
Homo sapiens
Biosample type
177
tissue
59
cell line
49
primary cell
1
in vitro differentiated cells
Organ
68
kidney
36
limb
32
musculature of body
27
brain
27
heart
18
ureter
7
pancreas
5
blood vessel
5
vasculature
4
artery
3
eye
3
liver
2
adipose tissue
2
connective tissue
2
nerve
1
spleen
Project
177
AMP
Genome assembly (visualization)
176
GRCh38
161
hg19
Lab
176
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
177 results
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DNase-seq
Hi-C
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
body of pancreas
4
left renal cortex interstitium
4
left renal pelvis
4
right renal pelvis
4
heart left ventricle
3
retina
3
right renal cortex interstitium
3
coronary artery
2
frontal cortex
2
liver
2
omental fat pad
2
pancreas
2
right atrium auricular region
2
tibial artery
2
tibial nerve
2
Ammon's horn
1
ascending aorta
1
caudate nucleus
1
cerebellar cortex
1
cerebellum (Hemisphere)
1
forelimb muscle
1
globus pallidus
1
heart right ventricle
1
hindlimb muscle
1
inferior parietal cortex
1
islet of Langerhans
1
left cardiac atrium
1
medulla oblongata
1
midbrain
1
middle frontal gyrus
1
occipital lobe
1
pons
1
putamen
1
right lobe of liver
1
spleen
1
superior temporal gyrus
1
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