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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
452
total RNA-seq
19
ChIP-seq
4
ATAC-seq
2
DNase-seq
2
WGBS
2
small RNA-seq
Assay category
454
Transcription
19
DNA binding
6
DNA accessibility
2
DNA methylation
Target of assay
17
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
444
February, 2021
17
August, 2017
10
July, 2019
5
October, 2018
1
January, 2018
1
June, 2019
1
November, 2018
1
October, 2017
1
October, 2019
Available data
498
bam
481
bigWig
457
tsv
43
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
481
Homo sapiens
Biosample type
481
tissue
57
in vitro differentiated cells
32
primary cell
Organ
481
connective tissue
423
adipose tissue
373
pancreas
265
liver
202
brain
157
heart
91
kidney
91
limb
70
blood vessel
70
vasculature
58
bone element
57
musculature of body
31
nerve
27
artery
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
481
AMP
Genome assembly (visualization)
479
hg19
478
GRCh38
Lab
481
AMP-T2D consortium
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
481 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
tissue
adipose tissue
381
1
2
2
bone tissue
58
white adipose tissue
12
omental fat pad
4
3
1
2
1
subcutaneous adipose tissue
6
2
1
1
visceral abdominal adipose tissue
3
subcutaneous abdominal adipose tissue
1
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