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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
DNase-seq
20
ChIP-seq
1
FAIRE-seq
1
small RNA-seq
1
total RNA-seq
Assay category
69
DNA accessibility
20
DNA binding
2
Transcription
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
Date released
68
June, 2019
18
April, 2019
3
July, 2019
2
October, 2019
Available data
153
bed narrowPeak
98
bam
91
bigWig
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
12
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
91
Homo sapiens
Biosample type
91
tissue
28
primary cell
12
cell line
Organ
481
connective tissue
423
adipose tissue
373
pancreas
265
liver
202
brain
157
heart
91
kidney
91
limb
70
blood vessel
70
vasculature
58
bone element
57
musculature of body
31
nerve
27
artery
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
91
AMP
Genome assembly (visualization)
90
GRCh38
90
hg19
Lab
91
AMP-T2D consortium
BIOSAMPLE
ASSAY
91 results
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DNase-seq
ChIP-seq
FAIRE-seq
small RNA-seq
total RNA-seq
tissue
kidney
13
20
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
left renal cortex interstitium
4
left renal pelvis
4
right renal pelvis
4
right renal cortex interstitium
3
metanephros
1
1
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