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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
220
ChIP-seq
total RNA-seq
29
ATAC-seq
10
DNase-seq
10
WGBS
3
RRBS
2
FAIRE-seq
Assay category
220
DNA binding
41
DNA accessibility
13
DNA methylation
Target of assay
79
transcription factor
74
histone modification
73
histone
67
control
45
broad histone mark
28
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
86
August, 2017
58
October, 2018
48
December, 2017
26
November, 2018
18
May, 2022
17
October, 2017
7
December, 2018
7
January, 2019
6
September, 2017
1
March, 2019
Available data
1000
bam
944
bed narrowPeak
831
bigWig
561
bigBed narrowPeak
274
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
145
tsv
98
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
267
Homo sapiens
Biosample type
422
cell line
289
primary cell
274
tissue
126
in vitro differentiated cells
4
stem cell
Organ
110
pancreas
83
liver
43
adipose tissue
43
connective tissue
24
spleen
12
brain
2
musculature of body
Project
274
AMP
Genome assembly (visualization)
197
hg19
183
GRCh38
Lab
254
AMP-T2D consortium
18
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
274 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
RRBS
FAIRE-seq
tissue
liver
67
2
1
1
islet of Langerhans
28
20
1
1
body of pancreas
33
4
2
2
spleen
20
1
1
2
pancreas
16
2
1
omental fat pad
11
1
1
subcutaneous adipose tissue
12
1
right lobe of liver
10
1
1
white adipose tissue
12
brain
9
2
adipose tissue
2
3
skeletal muscle tissue
2
cerebellum (Hemisphere)
1
See all biosamples
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