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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
RRBS
1
WGBS
Assay category
77
DNA binding
4
DNA accessibility
2
DNA methylation
Target of assay
39
transcription factor
20
control
18
histone modification
17
histone
10
broad histone mark
7
narrow histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
48
December, 2017
28
August, 2017
7
November, 2018
Available data
288
bam
265
bigWig
154
tsv
113
bed narrowPeak
83
fastq
70
tagAlign
49
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
83
Homo sapiens
Biosample type
367
cell line
83
tissue
15
in vitro differentiated cells
Organ
213
pancreas
83
liver
43
adipose tissue
43
connective tissue
24
spleen
12
brain
2
musculature of body
Project
83
AMP
Genome assembly (visualization)
63
hg19
62
GRCh38
Lab
83
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
83 results
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ChIP-seq
DNase-seq
ATAC-seq
RRBS
WGBS
tissue
liver
67
2
1
1
right lobe of liver
10
1
1
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