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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
10
total RNA-seq
5
single cell RNA-seq
1
snATAC-seq
Assay category
15
Transcription
1
DNA accessibility
Date released
89
February, 2021
7
May, 2022
4
February, 2023
Available data
1409
bam
1291
bigWig
907
bed narrowPeak
619
tsv
551
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
100
txt
23
bed bedMethyl
23
bigBed bedMethyl
10
bedpe bed3+
10
hic
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
100
Homo sapiens
Biosample type
100
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
6
pancreas
5
kidney
4
skeleton
1
musculature of body
Project
100
AMP
Genome assembly (visualization)
1
hg19
Lab
94
AMP-T2D consortium
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
6
audit script error
lab.title!
Katalin Susztak, Upenn
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
100 results
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RNA microarray
total RNA-seq
single cell RNA-seq
snATAC-seq
tissue
bone element
84
islet of Langerhans
6
kidney
5
acetabular part of hip bone
1
ilium
1
ischium
1
pubis
1
skeletal muscle tissue
1
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