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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
145
ChIP-seq
27
ATAC-seq
14
total RNA-seq
9
DNase-seq
6
WGBS
1
FAIRE-seq
Assay category
145
DNA binding
37
DNA accessibility
14
Transcription
6
DNA methylation
Target of assay
56
transcription factor
55
control
34
histone
34
histone modification
24
broad histone mark
13
RNA binding protein
10
narrow histone mark
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
August, 2017
58
October, 2018
48
December, 2017
26
November, 2018
24
May, 2022
17
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
July, 2018
1
March, 2019
Available data
1737
bam
1554
bigWig
987
tsv
878
bed narrowPeak
539
bigBed narrowPeak
202
fastq
187
bed broadPeak
179
bed bed3+
179
tagAlign
176
bigBed broadPeak
157
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
202
Homo sapiens
Biosample type
427
cell line
351
primary cell
202
tissue
87
in vitro differentiated cells
4
stem cell
Organ
86
pancreas
55
liver
25
adipose tissue
25
connective tissue
24
spleen
12
brain
Project
202
AMP
Genome assembly (visualization)
134
hg19
122
GRCh38
Lab
176
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
August, 2017
BIOSAMPLE
ASSAY
202 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
FAIRE-seq
tissue
liver
42
2
body of pancreas
33
4
2
2
islet of Langerhans
6
20
14
spleen
20
1
1
2
omental fat pad
11
1
1
subcutaneous adipose tissue
12
brain
9
2
right lobe of liver
10
1
pancreas
2
2
1
cerebellum (Hemisphere)
1
See all biosamples
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