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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
7
ChIP-seq
6
Hi-C
5
total RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
7
DNA binding
7
Transcription
6
3D chromatin structure
1
DNA methylation
Target of assay
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
1
control
Date released
32
June, 2019
August, 2017
7
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
44
bam
44
bigWig
38
bed narrowPeak
38
bigBed narrowPeak
33
bed bed3+
32
bed broadPeak
32
bigBed broadPeak
7
tsv
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
Organism
56
Homo sapiens
Biosample type
56
tissue
14
primary cell
Organ
490
connective tissue
431
adipose tissue
358
pancreas
307
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
73
artery
56
eye
56
musculature of body
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
56
AMP
Genome assembly (visualization)
46
hg19
42
GRCh38
Lab
56
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
August, 2017
BIOSAMPLE
ASSAY
56 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
muscle of leg
13
7
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
skeletal muscle tissue
1
1
1
1
1
forelimb muscle
1
hindlimb muscle
1
left ventricle myocardium
1
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