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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
282
total RNA-seq
62
ATAC-seq
11
snATAC-seq
7
DNase-seq
6
single cell RNA-seq
4
MeRIP-seq
4
WGBS
3
Hi-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
290
Transcription
DNA binding
82
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
120
July, 2018
91
August, 2017
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
8
January, 2021
7
March, 2020
7
November, 2018
6
April, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
June, 2019
4
November, 2020
3
October, 2019
August, 2021
1
August, 2022
1
February, 2020
Available data
332
bam
291
bigWig
274
tsv
136
fastq
50
bed narrowPeak
9
bigBed narrowPeak
8
bed broadPeak
6
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
6
txt
3
hic
2
bedpe bed3+
1
bedpe
Organism
386
Homo sapiens
Biosample type
386
tissue
276
primary cell
62
cell line
Organ
472
connective tissue
414
adipose tissue
386
pancreas
206
liver
158
bone element
144
kidney
98
heart
56
brain
56
limb
54
blood vessel
54
eye
54
vasculature
53
musculature of body
43
artery
20
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
358
AMP
28
T1D
Genome assembly (visualization)
329
hg19
308
GRCh38
Lab
325
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
month_released!
August, 2021
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
386 results
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total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
single cell RNA-seq
MeRIP-seq
WGBS
Hi-C
FAIRE-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
277
58
7
1
6
4
2
1
1
body of pancreas
3
4
4
2
2
pancreas
2
4
2
2
1
1
1
1
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