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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
256
ChIP-seq
89
total RNA-seq
9
WGBS
5
RRBS
2
ATAC-seq
2
DNase-seq
1
FAIRE-seq
Assay category
256
DNA binding
89
Transcription
14
DNA methylation
5
DNA accessibility
Target of assay
184
histone modification
183
histone
110
broad histone mark
73
narrow histone mark
43
control
29
transcription factor
6
RNA binding protein
Date released
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
249
bam
243
bigWig
175
fastq
131
bed narrowPeak
89
tsv
86
bigBed narrowPeak
59
tagAlign
26
bed bed3+
26
bed broadPeak
5
bed bedMethyl
5
bigBed bedMethyl
Organism
357
Homo sapiens
Biosample type
364
tissue
68
in vitro differentiated cells
59
primary cell
Organ
147
pancreas
57
adipose tissue
57
connective tissue
57
heart
54
liver
26
musculature of body
23
kidney
Project
364
AMP
Genome assembly (visualization)
245
hg19
222
GRCh38
Lab
364
AMP-T2D consortium
Audit category:
22
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2021
BIOSAMPLE
ASSAY
364 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
heart left ventricle
35
skeletal muscle tissue
22
4
kidney
23
pancreas
14
heart right ventricle
13
white adipose tissue
12
heart
9
adipose tissue
2
3
right lobe of liver
1
1
subcutaneous adipose tissue
1
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