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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
455
total RNA-seq
74
ChIP-seq
6
WGBS
5
ATAC-seq
2
DNase-seq
2
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
457
Transcription
74
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
33
histone
33
histone modification
24
control
20
broad histone mark
17
transcription factor
13
narrow histone mark
5
RNA binding protein
Date released
444
February, 2021
57
August, 2017
23
October, 2018
10
July, 2019
2
February, 2020
2
October, 2019
1
August, 2021
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
498
bam
481
bigWig
457
tsv
43
fastq
12
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
545
Homo sapiens
Biosample type
546
tissue
84
in vitro differentiated cells
39
primary cell
1
stem cell
Organ
546
connective tissue
487
adipose tissue
487
pancreas
361
liver
299
kidney
264
brain
237
heart
150
bone element
122
limb
98
blood vessel
98
vasculature
82
musculature of body
43
nerve
38
artery
25
eye
25
spleen
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
546
AMP
Genome assembly (visualization)
481
hg19
480
GRCh38
Lab
546
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
February, 2023
BIOSAMPLE
ASSAY
546 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
DNase-seq
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
2
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
white adipose tissue
12
visceral abdominal adipose tissue
3
adipose tissue(adipose white tissue)
1
islet of Langerhans
1
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