Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
ChIP-seq
27
total RNA-seq
21
ATAC-seq
4
DNase-seq
4
WGBS
3
small RNA-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
105
DNA binding
31
Transcription
25
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
43
histone modification
42
histone
39
transcription factor
25
broad histone mark
23
control
17
narrow histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
May, 2020
54
August, 2017
48
December, 2017
40
May, 2022
8
July, 2019
7
November, 2018
6
October, 2019
3
March, 2020
1
February, 2020
1
February, 2021
Available data
95
bam
95
bigWig
86
bed narrowPeak
83
fastq
49
bigBed narrowPeak
20
tagAlign
11
tsv
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
168
Homo sapiens
Biosample type
400
cell line
168
tissue
15
in vitro differentiated cells
14
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
313
heart
299
kidney
265
brain
168
liver
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
168
AMP
Genome assembly (visualization)
98
hg19
76
GRCh38
Lab
128
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
month_released!
May, 2020
BIOSAMPLE
ASSAY
168 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
95
24
20
2
3
1
1
1
1
1
right lobe of liver
10
3
1
2
1
2
See all biosamples
Download