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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ATAC-seq
16
ChIP-seq
7
total RNA-seq
6
single cell RNA-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
38
DNA accessibility
16
DNA binding
13
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
16
control
Date released
35
February, 2023
11
May, 2019
7
July, 2019
6
August, 2021
6
October, 2019
3
February, 2020
3
March, 2020
Available data
100
bed narrowPeak
87
bam
70
bigWig
bigBed narrowPeak
14
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
71
Homo sapiens
Biosample type
71
tissue
66
cell line
16
primary cell
Organ
537
connective tissue
478
adipose tissue
443
pancreas
225
heart
212
kidney
158
bone element
149
brain
119
liver
71
blood vessel
71
vasculature
53
eye
48
artery
44
musculature of body
38
limb
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
71
AMP
Genome assembly (visualization)
43
GRCh38
8
hg19
Lab
71
AMP-T2D consortium
month_released!
May, 2020
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
71 results
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ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
36
2
1
aorta
2
1
4
2
1
1
thoracic aorta
1
4
2
tibial artery
1
5
1
ascending aorta
3
2
pulmonary artery
2
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