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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
ChIP-seq
89
total RNA-seq
15
WGBS
11
DNase-seq
5
RRBS
2
ATAC-seq
2
FAIRE-seq
Assay category
186
DNA binding
89
Transcription
20
DNA methylation
15
DNA accessibility
Target of assay
124
histone modification
123
histone
73
broad histone mark
50
narrow histone mark
32
control
30
transcription factor
3
other context
3
other post-translational modification
2
RNA binding protein
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
201
bigWig
201
fastq
196
bam
89
tsv
83
bed narrowPeak
59
tagAlign
39
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
11
bed bedMethyl
11
bigBed bedMethyl
9
bigBed broadPeak
Organism
303
Homo sapiens
Biosample type
310
tissue
68
in vitro differentiated cells
61
cell line
60
primary cell
Organ
154
pancreas
61
liver
58
adipose tissue
58
connective tissue
26
musculature of body
9
spleen
2
brain
Project
310
AMP
Genome assembly (visualization)
197
hg19
180
GRCh38
Lab
310
AMP-T2D consortium
Audit category:
22
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
month_released!
May, 2023
BIOSAMPLE
ASSAY
310 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
DNase-seq
RRBS
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
52
3
2
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
2
1
white adipose tissue
12
spleen
6
2
1
adipose tissue
2
3
body of pancreas
2
2
right lobe of liver
2
1
brain
2
omental fat pad
1
subcutaneous adipose tissue
1
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