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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
289
total RNA-seq
117
ChIP-seq
62
ATAC-seq
11
snATAC-seq
5
DNase-seq
4
Hi-C
4
MeRIP-seq
2
RRBS
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
291
Transcription
117
DNA binding
79
DNA accessibility
4
3D chromatin structure
2
DNA methylation
Target of assay
73
histone
73
histone modification
41
broad histone mark
32
narrow histone mark
29
control
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
147
August, 2017
120
July, 2018
51
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
9
March, 2020
8
January, 2021
November, 2018
6
April, 2018
6
July, 2019
6
September, 2017
5
March, 2019
5
October, 2017
4
June, 2019
4
November, 2020
3
October, 2019
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
422
bam
366
bigWig
275
tsv
206
fastq
120
bed narrowPeak
59
bigBed narrowPeak
25
bed bed3+
18
bed broadPeak
16
tagAlign
6
txt
4
bigBed broadPeak
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe
Organism
491
Homo sapiens
Biosample type
498
tissue
346
primary cell
92
cell line
3
in vitro differentiated cells
Organ
546
connective tissue
498
pancreas
487
adipose tissue
354
liver
299
kidney
273
heart
263
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
20
lung
18
ureter
16
skeleton
16
spleen
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
468
AMP
30
T1D
Genome assembly (visualization)
410
hg19
380
GRCh38
Lab
435
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2018
BIOSAMPLE
ASSAY
498 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
Hi-C
MeRIP-seq
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
tissue
islet of Langerhans
284
50
58
7
1
3
4
1
1
body of pancreas
3
35
4
2
2
pancreas
2
16
4
2
1
1
1
endocrine pancreas
16
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