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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
494
total RNA-seq
112
single cell RNA-seq
85
RNA microarray
72
ATAC-seq
6
snATAC-seq
3
snDrop-seq
2
Hi-C
Assay category
606
Transcription
78
DNA accessibility
2
3D chromatin structure
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
551
tsv
452
bam
444
bigWig
146
txt
72
bed narrowPeak
64
xls
6
csv
1
bedpe bed3+
1
hic
Organism
773
Homo sapiens
Biosample type
774
tissue
140
cell line
68
in vitro differentiated cells
52
primary cell
Organ
445
connective tissue
387
adipose tissue
150
bone element
136
kidney
92
heart
8
skeleton
6
blood vessel
6
limb
6
vasculature
2
artery
2
pancreas
1
liver
Project
774
AMP
Genome assembly (visualization)
516
GRCh38
453
hg19
Lab
644
AMP-T2D consortium
128
Katalin Susztak, Upenn
2
Bing Ren, UCSD
Audit category:
84
inconsistent ontology term
5
audit script error
BIOSAMPLE
ASSAY
774 results
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total RNA-seq
single cell RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
snDrop-seq
Hi-C
tissue
adipose tissue
381
kidney
49
13
64
6
1
bone element
84
bone tissue
58
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
aorta
4
aortic valve
4
pulmonary valve
4
tricuspid valve
4
mitral valve
3
subcutaneous adipose tissue
2
1
visceral abdominal adipose tissue
3
cardiac atrium
2
cardiac ventricle
2
interventricular septum
2
islet of Langerhans
1
1
pulmonary artery
2
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
liver
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
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