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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
38
ATAC-seq
26
total RNA-seq
4
MeRIP-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
48
DNA binding
39
DNA accessibility
27
Transcription
Target of assay
31
transcription factor
14
control
5
histone
5
histone modification
3
broad histone mark
2
RNA binding protein
2
chromatin remodeller
2
narrow histone mark
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
74
bed narrowPeak
72
bam
72
fastq
56
bigWig
36
bigBed narrowPeak
7
txt
1
bed bed3+
Organism
118
Homo sapiens
Biosample type
140
primary cell
118
tissue
43
in vitro differentiated cells
6
cell line
3
stem cell
Organ
88
liver
28
pancreas
2
musculature of body
Project
118
AMP
Genome assembly (visualization)
75
hg19
36
GRCh38
Lab
50
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
27
inconsistent control
1
audit script error
BIOSAMPLE
ASSAY
118 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
MeRIP-seq
single cell RNA-seq
snATAC-seq
tissue
liver
38
20
20
islet of Langerhans
18
6
4
right lobe of liver
10
skeletal muscle tissue
1
1
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