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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
total RNA-seq
15
ChIP-seq
8
ATAC-seq
1
pCHi-C
Assay category
39
Transcription
15
DNA binding
8
DNA accessibility
Target of assay
12
histone
12
histone modification
10
broad histone mark
3
control
2
narrow histone mark
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
53
bam
52
bigWig
38
tsv
17
fastq
14
tagAlign
12
bed narrowPeak
6
bigBed narrowPeak
4
bed broadPeak
Organism
63
Homo sapiens
Biosample type
206
primary cell
132
in vitro differentiated cells
63
tissue
21
cell line
Organ
42
pancreas
16
brain
2
heart
1
adipose tissue
1
connective tissue
1
spleen
1
thymus
Project
62
AMP
1
T1D
Genome assembly (visualization)
52
GRCh38
51
hg19
Lab
60
AMP-T2D consortium
2
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
63 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
tissue
islet of Langerhans
36
1
brain
15
body of pancreas
4
cardiac atrium
1
cardiac ventricle
1
cerebellum (Hemisphere)
1
omental fat pad
1
pancreas
1
spleen
1
thymus
1
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