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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
22
total RNA-seq
ATAC-seq
4
DNase-seq
4
pCHi-C
1
Hi-C
Assay category
195
DNA binding
22
Transcription
4
DNA accessibility
1
3D chromatin structure
Target of assay
168
histone
168
histone modification
129
narrow histone mark
39
broad histone mark
27
control
Date released
537
February, 2021
282
August, 2017
226
October, 2019
193
May, 2020
165
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
71
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
38
March, 2020
28
May, 2022
26
November, 2018
25
February, 2020
20
November, 2019
19
April, 2020
16
February, 2023
15
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
August, 2022
1
March, 2019
Available data
184
bam
157
bigWig
149
bed narrowPeak
49
tagAlign
46
bigBed narrowPeak
8
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bedpe bed3+
1
hic
1
tagAlign bed3+
Organism
226
Homo sapiens
Biosample type
226
tissue
32
primary cell
30
cell line
4
in vitro differentiated cells
Organ
85
brain
67
limb
41
nerve
25
artery
25
blood vessel
25
vasculature
20
eye
8
heart
6
liver
4
gonad
4
kidney
4
ovary
1
connective tissue
1
lymph node
1
pituitary gland
Project
226
AMP
Genome assembly (visualization)
160
hg19
159
GRCh38
Lab
226
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
226 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
Hi-C
tissue
tibial nerve
35
4
2
islet of Langerhans
21
14
4
tibial artery
23
2
heart
5
2
1
brain
5
1
liver
5
1
kidney
4
superior frontal gyrus
4
central medial thalamic nucleus
3
middle temporal gyrus
3
angular gyrus
2
anterior cingulate gyrus
2
cerebellum (Hemisphere)
2
gyrus rectus
2
medial globus pallidus
2
middle frontal gyrus
2
occipital pole
2
posterior cingulate gyrus
2
precuneus cortex
2
primary motor cortex
2
putamen
2
secondary auditory cortex
2
superior parietal cortex
2
supramarginal gyrus
2
white matter
2
agranular insular cortex
1
amygdala
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
body of caudate nucleus
1
brodmann area 43
1
claustrum of brain
1
cuneus
1
dentate nucleus
1
dorsal lateral geniculate nucleus
1
dorsal plus ventral thalamus
1
external globus pallidus
1
fastigial nucleus
1
frontal pole
1
head of caudate nucleus
1
hippocampal gyrus
1
hypothalamus
1
inferior frontal gyrus
1
inferior temporal gyrus
1
insular gyrus
1
lateral hypothalamic area
1
lateral occipital gyrus
1
lateral septal nucleus
1
layer of hippocampus
1
lingual gyrus
1
locus coeruleus
1
mammillary body
1
medial dorsal nucleus of thalamus
1
medial geniculate nucleus
1
medial segment of precentral gyrus
1
midbrain tectum
1
myelencephalon
1
nucleus accumbens
1
olivary body
1
orbital gyrus
1
paraterminal gyrus
1
pineal body
1
piriform cortex
1
pituitary gland
1
planum polare
1
planum temporale
1
pons
1
postcentral gyrus
1
primary somatosensory cortex
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
subiculum
1
substantia nigra
1
substantia nigra pars reticulata
1
subthalamic nucleus
1
superior occipital gyrus
1
suprachiasmatic nucleus
1
temporal pole
1
transverse temporal gyrus
1
uncus of parahippocampal gyrus
1
ventral anterior nucleus of thalamus
1
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