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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
50
DNase-seq
50
total RNA-seq
27
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
132
DNA accessibility
115
Transcription
27
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
128
August, 2021
50
June, 2019
47
September, 2023
23
April, 2019
14
May, 2023
8
February, 2021
4
July, 2019
4
October, 2019
3
December, 2019
Available data
135
bed narrowPeak
80
bam
73
bigWig
69
bigBed narrowPeak
64
xls
62
txt
50
bed bed3+
50
bed broadPeak
50
bigBed broadPeak
12
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
281
Homo sapiens
Biosample type
281
tissue
36
primary cell
19
cell line
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
234
AMP
47
KPMP
Genome assembly (visualization)
147
GRCh38
74
hg19
Lab
142
Katalin Susztak, Upenn
92
AMP-T2D consortium
47
KPMP
Audit category:
7
audit script error
organ_slims!
bone element
ureter
BIOSAMPLE
ASSAY
281 results
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ATAC-seq
single cell RNA-seq
DNase-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
RRBS
small RNA-seq
tissue
kidney
75
64
13
49
27
6
1
1
1
renal cortex interstitium
11
right kidney
10
left kidney
9
left renal cortex interstitium
4
right renal cortex interstitium
3
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
renal glomerulus
1
See all biosamples
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