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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
ChIP-seq
97
total RNA-seq
29
ATAC-seq
10
DNase-seq
10
WGBS
6
single cell RNA-seq
3
RRBS
2
FAIRE-seq
Assay category
194
DNA binding
103
Transcription
41
DNA accessibility
13
DNA methylation
Target of assay
67
control
66
histone modification
65
histone
61
transcription factor
41
broad histone mark
24
narrow histone mark
14
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
153
August, 2017
58
October, 2018
48
December, 2017
26
November, 2018
24
May, 2022
13
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
July, 2018
1
March, 2019
Available data
1882
bam
1747
bigWig
1075
tsv
980
bed narrowPeak
558
bigBed narrowPeak
351
fastq
234
tagAlign
211
bed broadPeak
191
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
344
Homo sapiens
Biosample type
414
cell line
365
primary cell
351
tissue
135
in vitro differentiated cells
4
stem cell
Organ
203
pancreas
83
liver
31
adipose tissue
31
connective tissue
24
spleen
8
brain
2
musculature of body
Project
351
AMP
Genome assembly (visualization)
269
hg19
255
GRCh38
Lab
325
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
ovary
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
351 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
18
97
20
1
6
1
liver
67
2
1
1
body of pancreas
33
4
2
2
spleen
20
1
1
2
pancreas
16
2
1
omental fat pad
11
1
1
subcutaneous adipose tissue
12
1
right lobe of liver
10
1
1
brain
5
2
adipose tissue
2
3
skeletal muscle tissue
2
cerebellum (Hemisphere)
1
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