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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
73
ChIP-seq
6
WGBS
2
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
399
Transcription
73
DNA binding
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
56
August, 2017
23
October, 2018
10
July, 2019
2
February, 2020
1
August, 2021
1
March, 2020
1
May, 2023
Available data
435
bam
417
bigWig
399
tsv
40
fastq
8
tagAlign
7
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
Organism
479
Homo sapiens
Biosample type
480
tissue
2
primary cell
1
in vitro differentiated cells
Organ
539
connective tissue
480
adipose tissue
423
pancreas
336
liver
233
brain
207
heart
149
kidney
146
bone element
90
blood vessel
90
vasculature
78
limb
48
musculature of body
40
nerve
32
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
480
AMP
Genome assembly (visualization)
417
GRCh38
416
hg19
Lab
480
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
480 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
white adipose tissue
12
visceral abdominal adipose tissue
3
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