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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
399
total RNA-seq
73
ChIP-seq
18
ATAC-seq
6
WGBS
2
DNase-seq
2
RNA microarray
2
small RNA-seq
1
pCHi-C
Assay category
401
Transcription
73
DNA binding
20
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
15
February, 2023
10
July, 2019
2
February, 2020
1
August, 2021
1
December, 2019
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
440
bam
423
bigWig
402
tsv
43
fastq
25
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
502
Homo sapiens
Biosample type
503
tissue
408
primary cell
79
cell line
25
in vitro differentiated cells
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
503
AMP
Genome assembly (visualization)
436
hg19
422
GRCh38
Lab
503
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
503 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
RNA microarray
small RNA-seq
pCHi-C
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
pigmented layer of retina
2
12
white adipose tissue
12
visceral abdominal adipose tissue
3
adipose tissue(adipose white tissue)
1
renal glomerulus
1
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