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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
total RNA-seq
151
ChIP-seq
21
ATAC-seq
4
WGBS
3
small RNA-seq
1
DNase-seq
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
174
Transcription
151
DNA binding
22
DNA accessibility
5
DNA methylation
Target of assay
70
histone modification
69
histone
46
control
44
narrow histone mark
35
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
54
August, 2017
48
December, 2017
40
May, 2022
8
July, 2019
November, 2018
6
October, 2019
2
March, 2020
1
February, 2020
1
February, 2021
Available data
281
bam
258
bigWig
154
tsv
106
bed narrowPeak
76
fastq
70
tagAlign
42
bigBed narrowPeak
3
bed bed3+
1
bed bedMethyl
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
353
Homo sapiens
Biosample type
354
cell line
353
tissue
15
in vitro differentiated cells
14
primary cell
Organ
546
connective tissue
495
pancreas
487
adipose tissue
353
liver
310
heart
299
kidney
263
brain
158
bone element
132
blood vessel
132
vasculature
122
limb
80
musculature of body
73
artery
56
eye
43
nerve
20
lung
18
ureter
16
skeleton
16
spleen
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
353
AMP
Genome assembly (visualization)
260
hg19
231
GRCh38
Lab
313
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
files.file_type!
bedpe bed3+
month_released!
November, 2018
BIOSAMPLE
ASSAY
353 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
141
20
3
1
1
1
1
right lobe of liver
3
10
1
1
2
1
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