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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
total RNA-seq
132
ChIP-seq
3
small RNA-seq
1
ATAC-seq
Assay category
152
Transcription
132
DNA binding
1
DNA accessibility
Target of assay
50
histone modification
49
histone
43
control
39
transcription factor
36
narrow histone mark
13
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
48
December, 2017
26
August, 2017
7
July, 2019
6
October, 2019
4
November, 2018
1
March, 2020
Available data
288
bam
265
bigWig
154
tsv
113
bed narrowPeak
83
fastq
70
tagAlign
49
bigBed narrowPeak
6
bed bed3+
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
285
Homo sapiens
Biosample type
308
cell line
285
tissue
15
in vitro differentiated cells
10
primary cell
Organ
496
connective tissue
438
adipose tissue
416
pancreas
285
liver
191
brain
105
heart
82
blood vessel
82
vasculature
78
limb
66
bone element
40
nerve
30
artery
30
kidney
23
spleen
12
musculature of body
8
skeleton
1
pituitary gland
Project
285
AMP
Genome assembly (visualization)
243
hg19
235
GRCh38
Lab
285
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
285 results
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total RNA-seq
ChIP-seq
small RNA-seq
ATAC-seq
tissue
liver
147
122
1
right lobe of liver
2
10
2
1
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