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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
total RNA-seq
132
ChIP-seq
9
ATAC-seq
3
DNase-seq
3
small RNA-seq
Assay category
152
Transcription
132
DNA binding
12
DNA accessibility
Target of assay
50
histone modification
49
histone
43
control
39
transcription factor
36
narrow histone mark
13
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
48
December, 2017
26
August, 2017
8
February, 2021
7
July, 2019
7
November, 2018
6
October, 2019
1
March, 2020
Available data
296
bam
265
bigWig
154
tsv
121
bed narrowPeak
83
fastq
70
tagAlign
49
bigBed narrowPeak
6
bed bed3+
4
bed bed3
4
txt
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
296
Homo sapiens
Biosample type
366
cell line
296
tissue
15
in vitro differentiated cells
12
primary cell
Organ
498
connective tissue
440
adipose tissue
429
pancreas
288
liver
226
brain
132
heart
114
limb
98
kidney
87
blood vessel
87
vasculature
66
bone element
44
musculature of body
42
nerve
34
artery
24
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
296
AMP
Genome assembly (visualization)
254
hg19
246
GRCh38
Lab
296
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
296 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
small RNA-seq
tissue
liver
147
122
2
1
right lobe of liver
2
10
1
1
2
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
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