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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
total RNA-seq
132
ChIP-seq
21
DNase-seq
3
small RNA-seq
1
ATAC-seq
Assay category
152
Transcription
132
DNA binding
22
DNA accessibility
Target of assay
50
histone modification
49
histone
43
control
39
transcription factor
36
narrow histone mark
13
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
48
December, 2017
26
August, 2017
18
June, 2019
7
July, 2019
7
November, 2018
6
October, 2019
1
March, 2020
Available data
306
bam
283
bigWig
154
tsv
131
bed narrowPeak
83
fastq
70
tagAlign
67
bigBed narrowPeak
24
bed bed3+
21
bed broadPeak
21
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
306
Homo sapiens
Biosample type
366
cell line
306
tissue
15
in vitro differentiated cells
12
primary cell
Organ
498
connective tissue
440
adipose tissue
429
pancreas
288
liver
226
brain
132
heart
114
limb
98
kidney
87
blood vessel
87
vasculature
66
bone element
44
musculature of body
42
nerve
34
artery
24
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
306
AMP
Genome assembly (visualization)
264
hg19
256
GRCh38
Lab
306
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
306 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
small RNA-seq
ATAC-seq
tissue
liver
147
122
2
1
right lobe of liver
2
10
1
2
1
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
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