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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
total RNA-seq
130
ChIP-seq
3
DNase-seq
3
small RNA-seq
1
ATAC-seq
Assay category
152
Transcription
130
DNA binding
4
DNA accessibility
Target of assay
50
histone modification
49
histone
43
control
39
transcription factor
36
narrow histone mark
13
broad histone mark
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
46
December, 2017
26
August, 2017
7
July, 2019
7
November, 2018
6
October, 2019
1
March, 2020
Available data
286
bam
263
bigWig
154
tsv
111
bed narrowPeak
81
fastq
70
tagAlign
47
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
286
Homo sapiens
Biosample type
313
cell line
286
tissue
13
in vitro differentiated cells
12
primary cell
Organ
493
connective tissue
435
adipose tissue
421
pancreas
286
liver
226
brain
127
heart
114
limb
97
kidney
84
blood vessel
84
vasculature
66
bone element
44
musculature of body
42
nerve
33
artery
24
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
286
AMP
Genome assembly (visualization)
244
hg19
236
GRCh38
Lab
286
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
286 results
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total RNA-seq
ChIP-seq
DNase-seq
small RNA-seq
ATAC-seq
tissue
liver
147
121
2
1
right lobe of liver
2
9
1
2
1
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