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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
183
ChIP-seq
172
total RNA-seq
58
ATAC-seq
8
DNase-seq
4
WGBS
3
single cell RNA-seq
3
small RNA-seq
1
Hi-C
1
RRBS
1
pCHi-C
Assay category
183
DNA binding
178
Transcription
66
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
90
histone modification
89
histone
53
control
50
narrow histone mark
40
transcription factor
39
broad histone mark
3
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
54
August, 2017
48
December, 2017
40
May, 2022
35
February, 2023
32
October, 2019
9
July, 2019
7
November, 2018
5
May, 2019
3
February, 2020
3
March, 2020
2
August, 2021
2
June, 2019
1
February, 2021
Available data
322
bam
292
bigWig
175
bed narrowPeak
158
tsv
83
fastq
74
bigBed narrowPeak
70
tagAlign
10
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
434
Homo sapiens
Biosample type
467
cell line
434
tissue
16
primary cell
15
in vitro differentiated cells
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
434
AMP
Genome assembly (visualization)
300
GRCh38
295
hg19
Lab
394
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
434 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
small RNA-seq
Hi-C
RRBS
pCHi-C
tissue
liver
145
167
20
2
3
1
1
1
1
1
coronary artery
5
1
36
2
tibial artery
23
1
1
2
right lobe of liver
10
3
1
2
1
2
pulmonary artery
2
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