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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
total RNA-seq
159
ChIP-seq
21
ATAC-seq
4
DNase-seq
4
WGBS
3
small RNA-seq
2
pCHi-C
1
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
174
Transcription
159
DNA binding
25
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
74
histone modification
73
histone
48
narrow histone mark
46
control
39
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
54
August, 2017
48
December, 2017
40
May, 2022
10
October, 2019
8
July, 2019
7
November, 2018
4
March, 2020
1
February, 2020
1
February, 2021
Available data
288
bam
265
bigWig
155
tsv
113
bed narrowPeak
83
fastq
70
tagAlign
49
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
366
Homo sapiens
Biosample type
401
cell line
366
tissue
15
in vitro differentiated cells
14
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
366
AMP
Genome assembly (visualization)
268
hg19
238
GRCh38
Lab
326
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
366 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
pCHi-C
Hi-C
RRBS
single cell RNA-seq
tissue
liver
167
145
20
2
3
1
1
1
1
1
right lobe of liver
3
10
1
2
1
2
islet of Langerhans
4
ovary
1
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