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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
228
ChIP-seq
177
total RNA-seq
59
ATAC-seq
9
DNase-seq
6
WGBS
6
single cell RNA-seq
3
small RNA-seq
2
Hi-C
2
pCHi-C
1
RRBS
Assay category
228
DNA binding
186
Transcription
68
DNA accessibility
7
DNA methylation
2
3D chromatin structure
Target of assay
124
histone modification
123
histone
62
control
62
narrow histone mark
61
broad histone mark
42
transcription factor
5
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
54
August, 2017
50
May, 2019
48
December, 2017
40
May, 2022
35
February, 2023
32
October, 2019
15
July, 2019
7
November, 2018
6
August, 2021
6
March, 2020
4
February, 2020
3
June, 2019
February, 2021
Available data
375
bam
335
bigWig
213
bed narrowPeak
168
tsv
111
bigBed narrowPeak
83
fastq
70
tagAlign
11
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
Organism
493
Homo sapiens
Biosample type
493
tissue
399
cell line
50
primary cell
15
in vitro differentiated cells
Organ
505
pancreas
360
liver
313
heart
291
kidney
265
brain
133
blood vessel
133
vasculature
116
limb
103
connective tissue
102
adipose tissue
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
493
AMP
Genome assembly (visualization)
343
GRCh38
338
hg19
Lab
453
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
month_released!
February, 2021
BIOSAMPLE
ASSAY
493 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
small RNA-seq
Hi-C
pCHi-C
RRBS
tissue
liver
145
167
20
2
3
1
1
1
1
coronary artery
5
1
36
2
tibial artery
23
1
1
2
aorta
13
1
2
4
1
1
ascending aorta
16
2
1
right lobe of liver
10
3
1
2
1
2
thoracic aorta
16
2
1
pulmonary artery
2
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