Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
230
ChIP-seq
196
total RNA-seq
87
ATAC-seq
12
DNase-seq
7
single cell RNA-seq
6
WGBS
6
pCHi-C
3
small RNA-seq
2
Hi-C
1
RRBS
Assay category
230
DNA binding
206
Transcription
99
DNA accessibility
7
DNA methylation
2
3D chromatin structure
Target of assay
126
histone modification
125
histone
64
narrow histone mark
62
control
61
broad histone mark
42
transcription factor
5
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
66
February, 2023
54
August, 2017
53
October, 2019
50
May, 2019
48
December, 2017
40
May, 2022
15
July, 2019
7
November, 2018
6
August, 2021
6
June, 2019
6
March, 2020
5
February, 2020
1
February, 2021
Available data
378
bam
338
bigWig
243
bed narrowPeak
173
tsv
114
bigBed narrowPeak
83
fastq
70
tagAlign
14
bed bed3+
11
bed broadPeak
11
bigBed broadPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
csv
Organism
550
Homo sapiens
Biosample type
550
tissue
467
cell line
55
primary cell
15
in vitro differentiated cells
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
550
AMP
Genome assembly (visualization)
368
hg19
346
GRCh38
Lab
510
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
550 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
tissue
liver
145
167
20
2
1
3
1
1
1
1
coronary artery
5
1
36
2
tibial artery
23
1
1
2
aorta
13
1
4
2
1
1
islet of Langerhans
2
14
1
4
retina
3
15
3
ascending aorta
16
2
1
right lobe of liver
10
3
1
2
1
2
thoracic aorta
16
2
1
pigmented layer of retina
2
12
pulmonary artery
2
See all biosamples
Download