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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
6
Hi-C
4
RRBS
2
total RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
24
DNA binding
6
3D chromatin structure
4
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
4
control
Date released
26
August, 2017
4
July, 2019
3
March, 2020
2
February, 2020
2
May, 2019
2
May, 2022
1
January, 2018
Available data
15
bigWig
15
tagAlign
14
bed narrowPeak
13
bed broadPeak
3
tsv
2
bam
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
1
bed bed3+
1
bigBed narrowPeak
1
txt
Organism
40
Homo sapiens
Biosample type
40
tissue
3
primary cell
Organ
134
kidney
123
liver
122
heart
119
pancreas
92
bone element
67
connective tissue
66
adipose tissue
62
brain
53
eye
40
musculature of body
28
blood vessel
28
vasculature
26
limb
20
lung
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
40
AMP
Genome assembly (visualization)
61
hg19
GRCh38
Lab
40
AMP-T2D consortium
Audit category:
1
audit script error
assembly!
GRCh38
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
1
muscle of leg
2
left ventricle myocardium
1
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