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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
29
ChIP-seq
6
Hi-C
4
RRBS
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
29
DNA binding
6
3D chromatin structure
5
DNA methylation
1
Transcription
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
32
June, 2019
26
August, 2017
7
May, 2019
5
July, 2019
2
March, 2020
2
May, 2022
1
January, 2018
Available data
57
bigWig
51
bed narrowPeak
45
bed broadPeak
44
bam
38
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
15
tagAlign
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
75
Homo sapiens
Biosample type
75
tissue
12
primary cell
Organ
287
kidney
242
brain
230
pancreas
207
liver
162
heart
119
blood vessel
119
vasculature
115
limb
100
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
51
eye
38
nerve
24
spleen
19
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
75
AMP
Genome assembly (visualization)
57
hg19
38
GRCh38
Lab
75
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
tsv
BIOSAMPLE
ASSAY
75 results
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Clear Filters
DNase-seq
ChIP-seq
Hi-C
RRBS
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
muscle of leg
13
7
1
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
forelimb muscle
1
hindlimb muscle
1
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