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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
ChIP-seq
39
ATAC-seq
37
DNase-seq
12
total RNA-seq
7
Hi-C
7
single cell RNA-seq
4
RRBS
3
WGBS
2
pCHi-C
1
small RNA-seq
1
snATAC-seq
Assay category
102
DNA binding
77
DNA accessibility
20
Transcription
7
3D chromatin structure
7
DNA methylation
Target of assay
79
histone
79
histone modification
52
broad histone mark
27
narrow histone mark
20
control
3
RNA binding protein
3
transcription factor
Date released
57
May, 2019
35
February, 2023
35
June, 2019
26
August, 2017
26
October, 2019
14
July, 2019
8
March, 2020
6
August, 2021
5
February, 2020
2
May, 2022
1
January, 2018
Available data
151
bed narrowPeak
131
bam
127
bigWig
100
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
21
tsv
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
bedpe bed3+
3
hic
2
fastq
1
txt
Organism
215
Homo sapiens
Biosample type
215
tissue
66
cell line
45
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
215
AMP
Genome assembly (visualization)
147
GRCh38
131
hg19
Lab
215
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
215 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
Hi-C
single cell RNA-seq
RRBS
WGBS
pCHi-C
small RNA-seq
snATAC-seq
tissue
coronary artery
5
36
2
1
skeletal muscle tissue
22
1
1
1
4
1
1
tibial artery
23
1
2
1
aorta
13
1
1
4
2
1
muscle of leg
7
13
1
ascending aorta
16
1
2
thoracic aorta
16
1
2
muscle of arm
17
gastrocnemius medialis
1
4
psoas muscle
2
2
1
pulmonary artery
2
forelimb muscle
1
hindlimb muscle
1
left ventricle myocardium
1
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