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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
289
total RNA-seq
64
ChIP-seq
62
ATAC-seq
11
snATAC-seq
4
Hi-C
4
MeRIP-seq
4
WGBS
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
291
Transcription
73
DNA accessibility
64
DNA binding
6
DNA methylation
4
3D chromatin structure
Target of assay
30
histone
30
histone modification
29
control
16
narrow histone mark
14
broad histone mark
7
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
133
August, 2017
120
July, 2018
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
11
October, 2018
9
March, 2020
8
January, 2021
6
April, 2018
6
July, 2019
6
September, 2017
5
March, 2019
5
October, 2017
4
November, 2018
4
November, 2020
3
October, 2019
2
August, 2021
1
August, 2022
1
February, 2020
1
May, 2019
Available data
429
bam
373
bigWig
275
tsv
213
fastq
123
bed narrowPeak
bigBed narrowPeak
27
bed bed3+
20
bed broadPeak
16
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
442
Homo sapiens
Biosample type
443
tissue
324
primary cell
85
cell line
3
in vitro differentiated cells
Organ
537
connective tissue
478
adipose tissue
443
pancreas
312
liver
225
heart
212
kidney
158
bone element
149
brain
71
blood vessel
71
vasculature
53
eye
48
artery
44
musculature of body
38
limb
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
413
AMP
30
T1D
Genome assembly (visualization)
353
hg19
326
GRCh38
Lab
380
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
443 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
Hi-C
MeRIP-seq
WGBS
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
284
50
58
7
3
4
1
body of pancreas
3
9
4
2
2
pancreas
2
3
4
1
2
1
1
endocrine pancreas
2
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