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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
DNase-seq
4
Hi-C
1
RRBS
1
WGBS
Assay category
66
DNA binding
12
DNA accessibility
7
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
June, 2019
7
May, 2019
6
February, 2021
6
July, 2019
3
February, 2020
Available data
82
bam
60
bed narrowPeak
59
bigWig
52
bigBed narrowPeak
7
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
91
Homo sapiens
Biosample type
91
tissue
1
primary cell
Organ
546
connective tissue
501
pancreas
487
adipose tissue
361
liver
286
heart
240
brain
231
kidney
158
bone element
130
blood vessel
130
vasculature
90
limb
71
artery
53
eye
50
musculature of body
43
nerve
25
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
91
AMP
Genome assembly (visualization)
65
hg19
64
GRCh38
Lab
91
AMP-T2D consortium
month_released!
June, 2019
BIOSAMPLE
ASSAY
91 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
Hi-C
RRBS
WGBS
tissue
tibial nerve
35
1
5
2
tibial artery
23
1
1
2
muscle of leg
7
1
gastrocnemius medialis
1
4
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
islet of Langerhans
1
pericardium
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
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