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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
53
total RNA-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
1
ChIP-seq
1
DNase-seq
Assay category
117
Transcription
82
DNA accessibility
1
DNA binding
Target of assay
control
1
RNA binding protein
1
transcription factor
Date released
127
August, 2021
47
September, 2023
14
May, 2023
8
February, 2021
4
February, 2023
3
December, 2019
1
April, 2019
1
June, 2019
Available data
66
txt
65
bed narrowPeak
64
xls
10
tsv
5
csv
2
bam
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
1
bigWig
Organism
205
Homo sapiens
Biosample type
205
tissue
8
primary cell
4
cell line
Organ
201
kidney
184
heart
97
brain
88
bone element
65
pancreas
48
liver
47
blood vessel
47
vasculature
41
connective tissue
40
adipose tissue
39
artery
26
eye
20
lung
17
musculature of body
9
limb
5
gonad
5
ovary
4
skeleton
3
epithelium
3
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
158
AMP
47
KPMP
Genome assembly (visualization)
173
GRCh38
hg19
Lab
141
Katalin Susztak, Upenn
47
KPMP
17
AMP-T2D consortium
Audit category:
7
audit script error
assembly!
hg19
target.investigated_as!
control
BIOSAMPLE
ASSAY
205 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
snDrop-seq
RNA microarray
ChIP-seq
DNase-seq
tissue
kidney
75
64
49
6
1
acetabular part of hip bone
1
ilium
1
ischium
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
left kidney
1
pubis
1
renal glomerulus
1
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