Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
289
total RNA-seq
109
ChIP-seq
62
ATAC-seq
11
snATAC-seq
7
DNase-seq
4
Hi-C
4
MeRIP-seq
4
WGBS
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
291
Transcription
109
DNA binding
82
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
73
histone
73
histone modification
41
broad histone mark
32
narrow histone mark
29
control
17
transcription factor
RNA binding protein
2
nucleotide modification
Date released
145
August, 2017
120
July, 2018
45
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
9
March, 2020
8
January, 2021
7
November, 2018
6
April, 2018
6
July, 2019
6
September, 2017
5
March, 2019
5
October, 2017
4
June, 2019
4
November, 2020
3
October, 2019
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
421
bam
365
bigWig
275
tsv
205
fastq
116
bed narrowPeak
56
bigBed narrowPeak
25
bed bed3+
20
bed broadPeak
16
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
490
Homo sapiens
Biosample type
497
tissue
31
primary cell
15
cell line
Organ
542
connective tissue
497
pancreas
483
adipose tissue
359
liver
303
heart
298
kidney
265
brain
158
bone element
130
blood vessel
130
vasculature
122
limb
82
musculature of body
72
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
467
AMP
30
T1D
Genome assembly (visualization)
405
hg19
378
GRCh38
Lab
434
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
9
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
RNA binding protein
organ_slims!
epithelium
BIOSAMPLE
ASSAY
497 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
Hi-C
MeRIP-seq
WGBS
FAIRE-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
284
48
58
7
1
3
4
1
1
body of pancreas
3
30
4
4
2
2
pancreas
2
15
4
2
1
2
1
1
1
endocrine pancreas
16
See all biosamples
Download