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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
153
ChIP-seq
103
total RNA-seq
29
ATAC-seq
10
DNase-seq
10
WGBS
3
RRBS
2
FAIRE-seq
Assay category
153
DNA binding
103
Transcription
41
DNA accessibility
13
DNA methylation
Target of assay
79
transcription factor
74
histone modification
73
histone
control
45
broad histone mark
28
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
August, 2017
36
December, 2017
31
October, 2018
24
May, 2022
23
November, 2018
15
October, 2017
6
April, 2018
6
January, 2019
3
December, 2018
2
July, 2018
1
March, 2019
Available data
1740
bam
1732
bigWig
1076
tsv
944
bed narrowPeak
561
bigBed narrowPeak
310
fastq
213
bed broadPeak
202
bed bed3+
186
tagAlign
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
304
Homo sapiens
Biosample type
393
primary cell
365
cell line
310
tissue
119
in vitro differentiated cells
3
stem cell
Organ
195
pancreas
63
liver
24
adipose tissue
24
connective tissue
16
spleen
10
brain
2
musculature of body
Project
310
AMP
Genome assembly (visualization)
291
hg19
277
GRCh38
Lab
284
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
control
BIOSAMPLE
ASSAY
310 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
RRBS
FAIRE-seq
tissue
islet of Langerhans
21
103
20
1
1
liver
50
2
1
1
body of pancreas
25
4
2
2
pancreas
13
2
1
spleen
12
1
1
2
white adipose tissue
12
brain
7
2
right lobe of liver
7
1
1
omental fat pad
3
1
1
adipose tissue
1
3
subcutaneous adipose tissue
2
1
skeletal muscle tissue
2
cerebellum (Hemisphere)
1
See all biosamples
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